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Predictors of Natural Disordered Regions

 

PONDR® Output

The PONDR® output consists of up to three parts, depending on what is chosen by the user on the input form:

  1. A graphical representation of the PONDR® output

  2. A textual output using "D" to show disorder along the sequence

  3. A raw score for each predictor for each amino acid in the protein

Textual Output

This is the textual output from the VL-XT prediction upon RluC. The links popup a small window with a description of that particular item. (Of course, the actual output will not have these links.)

		PONDR® Protein Disorder Predictor
Developed by P. Romero, X. Li, A.K. Dunker, Z. Obradovic, E. Garner.

================================VLXT NNP STATISTICS================================
Predicted residues: 319			Number Disordered Regions: 6
Number residues disordered: 140		Longest Disordered Region: 54
Overall percent disordered: 43.89		Average Prediction Score: 0.4562
Predicted disorder segment [1]-[10]		Average Strength= 0.7624
Predicted disorder segment [34]-[87]		Average Strength= 0.8731
Predicted disorder segment [147]-[172]	Average Strength= 0.7688
Predicted disorder segment [189]-[192]	Average Strength= 0.5484
Predicted disorder segment [203]-[222]	Average Strength= 0.7444
Predicted disorder segment [294]-[319]	Average Strength= 0.7356

================================PREDICTOR OUTPUT================================
               "D" = Disordered                  " " = Ordered
================================================================================

1	 MKTETPSVKI VAITADEAGQ RIDNFLRTQL KGVPKSMIYR ILRKGEVRVN
VLXT	 DDDDDDDDDD                          DDDDDDD DDDDDDDDDD


51	 KKRIKPEYKL EAGDEVRIPP VRVAEREEEA VSPHLQKVAA LADVILYEDD
VLXT	 DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDDDDD              


101	 HILVLNKPSG TAVHGGSGLS FGVIEGLRAL RPEARFLELV HRLDRDTSGV
VLXT	                                                   DDDD


151	 LLVAKKRSAL RSLHEQLREK GMQKDYLALV RGQWQSHVKS VQAPLLKNIL
VLXT	 DDDDDDDDDD DDDDDDDDDD DD                 DD DD        


201	 QSGERIVRVS QEGKPSETRF KVEERYAFAT LVRCSPVTGR THQIRVHTQY
VLXT	   DDDDDDDD DDDDDDDDDD DD                              


251	 AGHPIAFDDR YGDREFDRQL TEAGTGLNRL FLHAAALKFT HPGTGEVMRI
VLXT	                                                DDDDDDD


301	 EAPMDEGLKR CLQKLRNAR
VLXT	 DDDDDDDDDD DDDDDDDDD