The PONDR® output consists of up to three parts, depending on what is chosen by the user on the input form:
A graphical representation of the PONDR® output
A textual output using "D" to show disorder along the sequence
A raw score for each predictor for each amino acid in the protein
This is the raw score output from the VL-XT prediction upon RluC (only the first 20 residues for brevity). The links popup a small window with a description of each section. (Of course, the actual output will not have these links.)
This output is optional (default is "not checked" on the
input form), but is provided for those who wish to see the raw data and possibly generate their own plots.
Num Res VLXT 1 M 0.9940060448 2 K 0.9937869841 3 T 0.9476151376 4 E 0.9524252608 5 T 0.7732025494 6 P 0.6935969266 7 S 0.6427511007 8 V 0.5884424632 9 K 0.5365154132 10 I 0.5016318974 11 V 0.4497788476 12 A 0.4051050372 13 I 0.3834360539 14 T 0.3593396956 15 A 0.3473534932 16 D 0.2996887982 17 E 0.2672663813 18 A 0.2352988213 19 G 0.1939858259 20 Q 0.1842714501
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Copyright © 2002, 2003 Molecular Kinetics, Inc., all rights reserved.
Access to PONDR® is provided by Molecular Kinetics (6201 La Pas Trail - Ste 160, Indianapolis, IN 46268;
www.molecularkinetics.com;
main@molecularkinetics.com) under license from the WSU Research Foundation.
PONDR® is copyright ©1999 by the WSU Research Foundation, all rights reserved.
Molecular Kinetics, Inc., Washington State University and the WSU Research Foundation and their several employees and consultants assume no liability, either real or implied, from the use of PONDR® in any of its forms or the results of its predictions for any damage, loss of time, loss of profit, either real or potential, or any other damage or loss that may arise from the use of PONDR® in any of its forms or from the results of its predictions. Last updated: Jan. 12, 2007.
